Publications:

2024:

Newsletter Editor/Author - Article and Video - Based on AI: Mathematical Functions Describe the Biological World, Outreach Publications without peer review, purpose: solely scientific outreach and promotion, dissemination, and stimulation of knowledge. Platform: LinkedIn:

• The Golden Ratio: The Mathematical Foundations of Nature’s Patterns. Link to the article.

• Good and Bad News: AI’s Energy Demand: Today, Tomorrow, and in the Future Link to the article.

• Markov Models in Sequence Analysis (DNA and Protein) Link to the article

Scientific publications

• A Journey through Cyanobacteria in Brazil: a review of novel genera and 16S rRNA sequences” accepted for publication in Cryptogamie, Algologie. S. S, G., K. R. de S., Mattos, L., & Oliveira, F. 2024.

• Machado, L. C., Dezordi, F. Z., Lima, G. B. de, Lima, R. E. de, Silva, L. C. A., Pereira, L. de M., Silva, A. F. da, et al. (2024). Spatiotemporal transmission of SARS-CoV-2 lineages during 2020–2021 in Pernambuco—Brazil. Microbiology Spectrum, Ahead of Print. Link to the Paper

Grant:

• Research grant of $133,588 USD in credits on the Google Cloud Platform! This grant, awarded in the “2ª edição Concurso de Projetos de Computação Avançada: Inteligência Artificial em Cloud,” will empower CNP team - CIIMAR to research deeper into unraveling Fatty Acyl-AMP Ligase substrates in Cyanobacteria using artificial intelligence.

  2023:

• Scientific Fiction: Book: Galaxium: The Guardian of Stars: An Epic Sci-Fi Hero’s Journey: A Tale of Power, Strength, Love, Science, Harmony, and Unity. https://www.amazon.com.br/Galaxium-Guardi%C3%A3o-Estrelas-Hist%C3%B3ria-Harmonia-ebook/dp/B0CP1LSPYQ

• De novo transcriptome assembly reveals giant hemoglobin model in Amynthas gracilis and sheds light on its future use as a biomarker of environmental metal pollution. Isis Sebastião, Leandro Mattos Pereira; Fernando R. Bachega; Lierge Ramos; Claudemir O. Souza; Francisco Adriano O. Carvalho; Patrícia Gleydes Morgante; Patrícia S. Santiago. In preparation phase.

• In the dawn of an early invasion: No genetic diversity of Angiostrongylus cantonensis in Ecuador? Authors: Luis Fernando Solórzano-Álava, César Humberto Bedoya-Pilozo, Hilda Hernández-Álvarez, Lázara Rojas-Rivero, Misladys Rodríguez-Ortega, Jorge Fraga-Nodarse, Leandro de Mattos Pereira, Raquel de Oliveira Simões, Roberto do Val Vilela. Link to the Paper, Pathogens, May 2023.

• Genome-resolved metagenomics unveil metabolic pathways hotspots of Carbon fixation, Methane, Nitrogen and Sulfur cycles coupled to Iron oxidation and reduction in natural lakes over Top an extensive lateritic crust in the Amazonian Savanna. In preparation for submission: Microbial Ecology Journal - The ISME Journal.

2021

• SARS-CoV-2 Mutations in Brazil: From Genomics to Clinical Conditions. L. F. S. M. Timmers.; J. V. Peixoto.; R. G. Ducati.; J. F. R. Bachega.; L. P. de Mattos.; R. A. Caceres.; F. Majolo.; G. L. da Silva.; M. I. Goettert.; O. A. Dellagostin.; J. A. P. Henriques.; L. L. Xavier.; S. Laufer. Preprint ChemRxiv Link to the Paper

• SARS-CoV-2 mutations in Brazil: from genomics to putative clinical conditions. L. F. S. M. Timmers.; J. V. Peixoto.; R. G. Ducati, J. F. R.; Bachega.; L. P. de Mattos.; R. A. Caceres.; F. Majolo.; G. L. da Silva.; M. I. Goettert.; O. A. Dellagostin.; J. A. P. Henriques.; L. L. Xavier.; S. Laufer. Janeiro de 2021. Science Reports, 11, article number: 11998 (2021). Link to the Paper

• De novo transcriptome reveals blood coagulation/antithrombin factors and infection mechanisms in Angiostrongylus cantonensis adult worms. Leandro de Mattos Pereira.; Milene Pereira Guimarães de Jezuz.; Amaranta Ramos Rangel.; Bruna Dalcin Baldasso.; Amanda Bungi Zaluskic.; Carlos Graeff-Teixeira.; Alessandra Loureiro Morassutti. Parasitology.1 – 44. Link to the Paper

• Coral Microbiome Manipulation Elicits metabolic and genetic restructuring to mitigate heat stress and evade Mortality. Santoro, E. P.; Borges, R. M.; Espinoza, J. L.; Freire., M.; Messias, C. S. M. A.; Villela, H. M. D.; Mattos, L. P.; Vilela, C. L. S.; Rosado, J. G.; Cardoso, P. M.; Rosado, P. M.; Assis, J. M.; Duarte, G. A. S.; Perna, G.; Rosado, A. S.; Macrae, A.; Dupont, C. L.; Nelson, K.E.; Sweet, M. J.; Voolstra, C. R.; Peixoto, R. S. Novembro de 2020. Science Advance. v. 7, p. eabg3088, 2021. Link to the Paper

2020

• Mollusk microbiota shift during Angiostrongylus cantonensis infection in the freshwater snail Biomphalaria glabrata and the terrestrial slug Phillocaulis soleiformis. Leandro de Mattos Pereira#; Joana Borges Osório#; Alessandra Loureiro Morassutti.; Jeremy Potriquet.; Adriana Giongo.; Renata Russo F. Cândido.; Jason Mulvenna.; Malcolm Jones, Carlos Graeff- Teixeira. Parasitology Research volume 119, pages2495–2503(2020). #Equal contribution. Link to the Paper

• Microbial communities in anaerobic digesters change over time and sampling depth. Adriana Giongo.; Granada, C. E.; Borges, L. G. A.; Leandro de M. Pereira.; Trindade, F. J.; Mattiello, S. P.; Oliveira, R. R.; Shubeita, F. M.; Lovato, A.; Marcon, C.; Renata Medina-Silva. Braz J Microbiol. 2020 Sep;51(3):1177-1190. Link to the Paper

• Identification of cross-reactive markers to strengthen the development of immunodiagnostic methods for angiostrongyliasis and other parasitic infections. Bianca Cognato.; Sukwan Handali.; Leandro de Mattos, José Barradas.; Alexandre Da Silva.; Carlos Graeff-Teixeira. Experimental Parasitology. 2020 Nov;218:107999, Epub 2020 Sep 18. Link to the Paper

• In depth transcriptome unravels the biotechnological potential of the Bothrops jararaca venom gland. Leandro de Mattos Pereira.; Miss Elisa Alves Messias.; Miss Bruna Sorroche.; Miss Angela das Neves Oliveira.; Lidia Maria Rebolho Batista Arantes.; Ana Carolina de Carvalho.; Anita Mitico Tanaka-Azevedo.; Kathleen Grego.; André Carvalho.; Matias Melendez. September, 17, 2020. J. Venom. Anim. Toxins incl. Trop. Dis, vol.26 Botucatu 2020 Epub Oct 21, 2020. Link to the Paper

2019

• Communities Change with Intensity of Vegetation Coverage in Arenized Soils from The Pampa Biome. Granada, Camille E.; Vargas, Luciano Kayser.; Lisboa, Bruno Brito.; Giongo, Adriana.; Martinho, Caroline Thais.; Pereira, Leandro de M.; De Oliveira, Rafael R.; Bruxel, Fernanda.; De Freitas, Elisete Maria.; Passaglia, Luciane M. P. Bacterial and Archaeal Frontiers in Microbiology, V. 10, P. X, 2019. Link to the Paper

• Distinct deep subsurface microbial communities found in Permian sandstones separated by mudstone. Adriana Giongo.; Taiana Haag.; Renata Medina-Silva.; Roberto Heemann.; Leandro M. Pereira.; Priscilla M. Zamberlan.; Fernanda P. Valdez.; Rafael R. Oliveira.; Eduardo Eizirik.; Adriano R. Viana.; and João Marcelo M. Ketze. Geosciences Journal. v. 23, p. 1-8, 2019. Link to the Paper

• Microbiota profile and impact of Fusobacterium nucleatum in colorectal cancer patients of Barretos Cancer Hospital. Ana Carolina de Carvalho.; Leandro de Mattos Pereira.; José Guilherme Datorre.; Wellington dos Santos.; Gustavo Noriz Berardinelli.; Marcus de Medeiros Matsushita.; Ronilson Oliveira Durães.; Denise Peixoto Guimarães.; Rui Manuel Reis. Frontiers in Oncology. 2019 Link to the Paper

• Meiofaunal diversity in the Atlantic Forest soil: A quest for nematodes in a native reserve using eukaryotic metabarcoding analysis. Carla Müller.; Leandro de Mattos Pereira.; Carina Lopes.; Juvenil Cares.; Adriana Giongo.; Luiz Gustavo dos Anjos Borges.; Carlos Graeff- Teixeira.; Alessandra Loureiro Morassutti. Forest Ecology and Management. v. 453, p. 117591, 2019. Link to the Paper

2018

• Mining of Potential Drug Targets Through the Identification of Essential and Analogous Enzymes in The Genomes of Pathogens of Glycine Max, Zea Mays and Solanum lycopersicum. Silva, Rangeline Azevedo Da.; Pereira, Leandro de Mattos.; Silveira, Melise Chaves.; Jardim, Rodrigo.; Miranda, Antonio Basilio De. Plos One, V. 13, P. E0197511-20, 2018. Link to the Paper

• Comparison of The Nasopharynx Microbiome Between Influenza and Non-Influenza Cases of Severe Acute Respiratory Infections: A Pilot Study. Borges, Luiz Gustavo Dos Anjos.; Giongo, Adriana.; Pereira, Leandro de Mattos.; Trindade, Fernanda J.; Gregianini, Tatiana Schäffer.; Campos, Fabrício Souza.; Ghedin, Elodie.; Da Veiga, Ana Beatriz Gorini. Health Science Reports, v. 1, P. E47-1, 2018. Link to the Paper

• Guarana (Paullinia Cupana Mart.) Alters Gut Microbiota and Modulates Redox Status, Partially Via Caffeine in Wistar Rats. Kleber Silveira, Alexandre.; Moresco, Karla Suzana.; Mautone Gomes, Henrique.; Da Silva Morrone.; Maurílio; Kich Grun, Lucas.; Pens Gelain, Daniel.; de Mattos Pereira, Leandro.; Giongo, Adriana.; Rodrigues De Oliveira, Rafael.; Fonseca Moreira, José Cláudio. September 2018. Phytotherapy Research 32(5). Link to the Paper

2017

• Recycled Paper Sludge Microbial Community as a Potential Source of Cellulase and Xylanase Enzymes. Heinz, Kássia G. H.; Zanoni, Patrícia R. S.; Oliveira, Rafael R.; Medina- Silva, Renata; Simão, Taiz L. L.; Trindade, Fernanda J.; Pereira, Leandro M. Pereira; Tavares, Lorena B.; Giongo, Adriana. August 2017. Waste and Biomass Valorization 8(6). Link to the Paper

• Microbial diversity from chlorophyll maximum, oxygen minimum and bottom zones in the southwestern Atlantic Ocean. Medina-Silva, Renata ; De Oliveira, Rafael R.; Pivel, Maria A.G.; Borges, Luiz G.A.; Simão, Taiz L.L.; Pereira, Leandro M.; Trindade, Fernanda J.; Augustin, Adolpho H.; Valdez, Fernanda P.; Eizirik, Eduardo ; Utz, Laura R.P.; Groposo, Claudia.; Miller, Dennis J.; Viana, Adriano R.; Ketzer, João M.M.; Giongo, Adriana. JOURNAL OF MARINE SYSTEMS, v. 171, p. MARSYS 3021, 2017. Link to the Paper

• Biogas from slaughterhouse wastewater anaerobic digestion is driven by the archaeal family Methanobacteriaceae and bacterial families Porphyromonadaceae and Tissierellaceae. Granada, Camille E.; Hasan, Camila; Marder, Munique; Konrad, Odorico; Vargas, Luciano K.; Passaglia, Luciane M.P.; Giongo, Adriana; De Oliveira, Rafael R.; de M. Pereira, Leandro; De Jesus Trindade, Fernanda; Sperotto, Raul A. October 2017. Renewable Energy 118. Link to the Paper.

2016

• Essential role of K + uptake permease (Kup) for resistance to sucrose-induced stress in Gluconacetobacter diazotrophicus PAl 5. De Oliveira, Marcos V. V.; Intorne, Aline C.; De, Luciano; Vespoli, S.; Andrade, Leandro F.; De, Leandro Pereira, M.; Rangel, Patrícia L.; De Souza Filho, Gonçalo A. Environmental Microbiology Reports, v. XX, p. XX-XX, 2016. Link to the Paper.

2014

• Self-incompatibility in passion fruit: cellular responses in incompatible pollination. Madureira, H. C.; Pereira, T. N.; Cunha, M.; Klein, D. E.; Oliveira, M. V. V.; Leandro de M. Pereira; de Souza Filho, G. A . BIOLOGIA, v. 69, p. 5, 2014. Link to the Paper

• The Comparative Genomics and Phylogenomic of Leishmania amazonenses Parasite. Davila, Alberto; Tschoeke, Diogo; Nunes, Gisele; Jardim, Rodrigo; Lima, Joana; Dumaresq, Aline; Gomes, Monete; De Mattos Pereira, Leandro ; Loureiro, Daniel; Stoco, Patricia ; De Matos Guedes, Herbert; de Miranda, Antonio; Ruiz, Jeronimo; Pitaluga, André; Silva, Floriano; Probst, Christian; Dickens, Nicholas; Mottram, Jeremy; Grisard, Edmundo. Evolutionary Bioinformatics, v. 10, p. 131, 2014. Link to the Paper

2012

• Essential role of the Czc determinant for cadmium, cobalt and zinc resistance in Gluconacetobacter diazotrophicus PAl 5. Aline C. Intorne ; Marcos V. V. de Oliveira; Leandro de M. Pereira; Gonçalo A. de Souza Filho. International Microbiology, v. 15, p. 69-78, 2012. Link to the Paper